WebNov 8, 2024 · PhosR: A set of methods and tools for comprehensive analysis of phosphoproteomics data. PhosR is a package for the comprenhensive analysis of … WebMar 2, 2024 · Download stats for annotation package PhosR This page was generated on 2024-03-02 14:12:47 -0500 (Thu, 02 Mar 2024). PhosR home page: release version, devel version. Number of downloads for annotation package PhosR, year by year, from 2024 back to 2009 (years with no downloads are omitted): 2024
PhosR · Issue #1538 · Bioconductor/Contributions · GitHub
WebNov 8, 2024 · Bioconductor / PhosR / selectGrps: Select by treatment groups (replicate block) selectGrps: Select by treatment groups (replicate block) In PhosR: A set of methods and tools for comprehensive analysis of phosphoproteomics data Description Usage Arguments Value Author (s) Examples View source: R/filter.R Description WebLet us start with gene-centric analysis. Such analysis can be directly applied to proteomics data. It can also be applied to phosphoproteomic data by using the phosCollapse function to summarise phosphosite information to the gene level. suppressPackageStartupMessages ( { library(PhosR) library(ClueR) library(ggplot2) library(parallel) }) dickensheets and associates
Why is PhosR not installing? - support.bioconductor.org
WebThe following demonstrates finding pathways that are enriched in insulin stimulation compared to basal. directPA package has built in pathway annotations and PhosR package implements both over-representation test and rank-based test. The pathway annotations included in directPA are from KEGG database and Reactome database. WebJun 1, 2024 · Together, PhosR facilitates interpretation and discovery from large-scale phosphoproteomic data sets. For complete details on the use and execution of this protocol, please refer to Kim et al. (2024). WebBefore we can start interpreting biology from our phoshoproteomic data, the first step is to perform data preprocessing and QC. These include (but not limited to) assessing data quality, filtering, imputing missing values where appropriate, and … dickensheets name origin